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View Structure Prediction Details

Protein: DTX54_ARATH
Organism: Arabidopsis thaliana
Length: 510 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DTX54_ARATH.

Description E-value Query
Range
Subject
Range
gi|113548993, gi... - gi|115453843|ref|NP_001050522.1| Os03g0571900 [Oryza sativa (japonica cultivar-group)], gi|113548993...
329.0 [0..3] [491..624]

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Predicted Domain #1
Region A:
Residues: [1-246]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDKIQSDDF TSHKNPTLPQ VIEELKELWA MVLPITAMNC LVYVRAVVSV LFLGRLGSLE  60
   61 LAGGALSIGF TNITGYSVMV GLASGLEPVC SQAYGSKNWD LLTLSLHRMV VILLMASLPI 120
  121 SLLWINLGPI MLFMGQNPEI TATAAEYCLY ALPDLLTNTL LQPLRVYLRS QRVTKPMMWC 180
  181 TLAAVAFHVP LNYWLVMVKH WGVPGVAIAS VVTNLIMVVL LVGYVWVSGM LQKRVSGDGD 240
  241 GGSTTM

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 40.408935
Match: PF01554.9
Description: No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [247-510]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VAVVAQSSSV MELVGGLGPL MRVAVPSCLG ICLEWWWYEI VIVMGGYLEN PKLAVAATGI  60
   61 LIQTTSLMYT VPMALAGCVS ARVGNELGAG RPYKARLAAN VALACAFVVG ALNVAWTVIL 120
  121 KERWAGLFTG YEPLKVLVAS VMPIVGLCEL GNCPQTTGCG ILRGTGRPAV GAHVNLGSFY 180
  181 FVGTPVAVGL AFWLKIGFSG LWFGLLSAQA ACVVSILYAV LARTDWEGEA VKAMRLTSLE 240
  241 MRKVGQDEES SLLLLDDEKL GDVL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 35.09691
Match: PF01554.9
Description: No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle