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View Structure Prediction Details

Protein: gi|110736294, gi...
Organism: Arabidopsis thaliana
Length: 109 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110736294, gi....

Description E-value Query
Range
Subject
Range
gi|22328924, gi|... - gi|45773918|gb|AAS76763.1| At4g25433 [Arabidopsis thaliana], gi|22328924|ref|NP_680740.1| peptidogly...
170.0 [0..8] [105..7]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKSSSMAVA EKISWYCAVF AAMMLLMNSF QVAQEGSTEI VEKQQPSMMI TGYSHRRPAC  60
   61 DEIYEVKEGE TLQTISEKCG DPYIVEGNPH IHDHDDLFPG LLIRITPSL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.509 d.50.1 dsRNA-binding domain-like
View Download 0.478 d.50.2 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
View Download 0.477 b.114.1 N-utilization substance G protein NusG, insert domain
View Download 0.446 d.17.2 Copper amine oxidase, domains 1 and 2
View Download 0.442 b.114.1 N-utilization substance G protein NusG, insert domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle