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View Structure Prediction Details

Protein: gi|15226830, gi|...
Organism: Arabidopsis thaliana
Length: 532 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15226830, gi|....

Description E-value Query
Range
Subject
Range
gi|92889836 - gi|92889836|gb|ABE90048.1| Berberine and berberine like, putative [Medicago truncatula]
376.0 [0..26] [531..23]

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Predicted Domain #1
Region A:
Residues: [1-532]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFAISKRNA TLFLVTLLLI SVPLSSSTLQ QDFVKCLVDN SDVSFPITAS FFSPDQNATL  60
   61 FKEELESTAQ NLRYLTPSNP KPVFIFEPLY ETHVQAAVVC AKKLQLHLRL RSGGHDYEGL 120
  121 SFVAEDETPF VIVDLSKLRQ VDVDLDSNSA WAHAGATIGE VYYRIQEKSQ THGFPAGLCS 180
  181 SLGIGGHLVG GAYGSMMRKF GLGADNVLDA RIVDANGQIL DRAAMGEDVF WAIRGGGGGS 240
  241 FGVILAWKIK LVPVPATVTV FTVTKTLEQD GTKVLYKWEQ IADKLDDDLF IRVIISPASK 300
  301 TTKPGNRTIS MSYQAQFLGD SNRLLQVMQK SFPELGLTKK DCTEMSWIKS VMYIAGFPNS 360
  361 AAPEALLAGK SLFKNHFKAK SDFVKEPIPV EGLEGLWERF LEEDSPLTIW NPYGGMMSRI 420
  421 SESEIPFPHR NGTLFKIQWL STWQDGKVSE ERHMKWIREM YSYMEQYVSK NPRQAYVNYR 480
  481 DLDLGTNEGE TDAREWGAKY YKGNFERLVK IKGEFDPDNF FRHEQSVPTK IG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.30103
Match: 2bvfA
Description: Crystal structure of 6-hydoxy-D-nicotine oxidase from Arthrobacter nicotinovorans. Crystal Form 3 (P21)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle