YRC Public Data Repository - Protein Structure Prediction

Protein:	LOX3_ARATH
Organism:	Arabidopsis thaliana
Length:	919 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LOX3_ARATH.

Description	E-value	Query Range	Subject Range
gi\|6002055 - gi\|6002055\|emb\|CAB56692.1\| lipoxygenase [Arabidopsis thaliana]	1166.0	[0..1]	[919..1]
gi\|899344, gi\|21... - gi\|899344\|emb\|CAA58859.1\| lipoxygenase [Nicotiana tabacum], pir\|\|S57964 lipoxygenase (EC 1.13.11.12)...	1159.0	[0..72]	[919..5]
LOX15_SOLTU - Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum GN=LOX1.5 PE=2 SV=1	1152.0	[0..78]	[919..13]
gi\|16904543 - gi\|16904543\|emb\|CAD10740.1\| lipoxygenase [Corylus avellana]	1151.0	[0..57]	[919..3]
gi\|10764845 - gi\|10764845\|gb\|AAG21691.1\| lipoxygenase [Lycopersicon esculentum]	1148.0	[0..71]	[919..4]
gi\|1942405, gi\|3... - gi\|58176653\|pdb\|1RRL\|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution, gi\|58176652...	1146.0	[0..81]	[919..7]
LOX3_PEA - Seed linoleate 9S-lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1	1143.0	[0..72]	[919..1]
gi\|8649004 - gi\|8649004\|emb\|CAB94852.1\| lipoxygenase [Prunus dulcis]	1142.0	[0..71]	[919..7]
gi\|32454710, gi\|... - gi\|32454710\|gb\|AAP83136.1\| lipoxygenase [Nicotiana attenuata], gi\|32454706\|gb\|AAP83134.1\| lipoxygena...	1142.0	[0..71]	[919..5]

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Predicted Domain #1

Region A:
Residues: [1-919]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV  60
   61 KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL KETLVKHLDA FADKIGRNIV 120
  121 LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK 180
  181 HQKEFFLESI TIEGFALGPV HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE 240
  241 KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS 300
  301 TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD 360
  361 FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST KGLLKYDTPK ILSKDKNAWL 420
  421 RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL 480
  481 EENRLYMLDY HDIFLPFLDR INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH 540
  541 RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM 600
  601 HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG 660
  661 LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA IQTWVRTYVE RYYPNPNLIK 720
  721 TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY 780
  781 GGYVPNRPPL MRRLIPDESD PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD 840
  841 EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL 900
  901 VPSSEPGVTC RGVPNSVSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1hu9A
Description:	Lipoxigenase, C-terminal domain; Plant lipoxigenase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits