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View Structure Prediction Details

Protein: gi|15228598, gi|...
Organism: Arabidopsis thaliana
Length: 499 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15228598, gi|....

Description E-value Query
Range
Subject
Range
gi|60657600 - gi|60657600|gb|AAX33321.1| secondary cell wall-related glycosyltransferase family 47 [Populus tremul...
463.0 [0..1] [497..1]
gi|11357531, gi|... - gi|6967106|emb|CAB72489.1| putative protein [Arabidopsis thaliana], gi|15230692|ref|NP_190126.1| exo...
418.0 [0..1] [496..3]
gi|113623864, gi... - gi|51964912|ref|XP_507240.1| PREDICTED OSJNBa0016C11.34 gene product [Oryza sativa (japonica cultiva...
406.0 [0..16] [499..77]

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Predicted Domain #1
Region A:
Residues: [1-151]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEKTNSRYL GVIITRKSII FLFISIITVL SWFFIFSSTN PNRVLDHISV SESTDVPLII  60
   61 IKNSNSSPQN NAPKPQNREG AETEEPIKEN RGGTKTESSM NQNRGETLRC IQRVSPSPRP 120
  121 LKVYMYDMSP EFHFGLLGWK PERNGVVWPD I

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [152-353]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVNVPHHPGG LNLQHSVEYW LTLDLLFSEL PEDSRSSRAA IRVKNSSEAD VVFVPFFSSL  60
   61 SYNRFSKVNQ KQKKSQDKEL QENVVKYVTS QKEWKTSGGK DHVIMAHHPN SMSTARHKLF 120
  121 PAMFVVADFG RYSPHVANVD KDIVAPYKHL VPSYVNDTSG FDGRPILLYF QGAIYRKAGG 180
  181 FVRQELYNLL KEEKDVHFSF GS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [354-499]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRNHGISKAG EGMRSSKFCL NIAGDTPSSN RLFDAIASHC IPVIISDDIE LPYEDVLNYN  60
   61 EFCLFVRSSD ALKKGFLMGL VRSIGREEYN KMWLRLKEVE RYFDLRFPVK DDEGDYAVQM 120
  121 IWKAVARKAP LVKMKVHRFQ RFTRPF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.591 N/A N/A a.25.1 Ferritin-like
View Download 0.562 N/A N/A d.20.1 UBC-like
View Download 0.524 N/A N/A a.25.1 Ferritin-like
View Download 0.524 N/A N/A a.25.1 Ferritin-like
View Download 0.459 N/A N/A a.1.1 Globin-like
View Download 0.446 N/A N/A a.39.2 Insect pheromon/odorant-binding proteins
View Download 0.446 N/A N/A a.39.2 Insect pheromon/odorant-binding proteins
View Download 0.415 N/A N/A a.1.1 Globin-like
View Download 0.414 N/A N/A c.1.17 Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
View Download 0.407 N/A N/A d.110.4 SNARE-like
View Download 0.407 N/A N/A d.110.4 SNARE-like
View Download 0.221 N/A N/A c.1.2 Ribulose-phoshate binding barrel


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle