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View Structure Prediction Details

Protein: gi|1657615, gi|1...
Organism: Arabidopsis thaliana
Length: 256 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1657615, gi|1....

Description E-value Query
Range
Subject
Range
gi|37536592, gi|... - gi|37536592|ref|NP_922598.1| putative cytochrome c-type biogenesis protein [Oryza sativa (japonica c...
282.0 [0..21] [242..14]

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Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARLLFRRS SQILRSIQRN PQISSSFESP PCPIFHSLTT ASPDPSRLSS LTFLRSLSIA  60
   61 RRGPTRPKKI DIGAKARQMQ NRR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [84-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LWTYALTFSC IAGFVVIVLN QFQDQLVFYL TPSDAMEKFA ENPTKNKFRL GGLVLEGSVA  60
   61 QPAASQEMEF VITDLITDIL VRYKGSLPDL FREGHSVVVE GFIKPYTDEV RKEVSTKPIS 120
  121 KKARNLDCFF SATEVLAKHD EKYMPQEVAA AIEKNKKIIE AAATEQAAEV AAS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.522879
Match: 1j6qA
Description: Heme chaperone CcmE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.44742917397369 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle