YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: FER3_ARATH
Organism: Arabidopsis thaliana
Length: 155 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FER3_ARATH.

Description E-value Query
Range
Subject
Range
gi|50919949, gi|... - gi|50919949|ref|XP_470335.1| putative ferredoxin [Oryza sativa (japonica cultivar-group)], gi|407146...
gi|125546341 - gi|125546341|gb|EAY92480.1| hypothetical protein OsI_14217 [Oryza sativa Indica Group]
143.0 [0..1] [155..1]

Back

Predicted Domain #1
Region A:
Residues: [1-155]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV  60
   61 YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA GACSTCAGQI VSGNVDQSDG 120
  121 SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.221849
Match: 1rfkA
Description: Crystal Structure of 2Fe2S Ferredoxin from Thermophilic Cyanobacterium Mastigocladus Laminosus
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle