| Protein: | PP216_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 486 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PP216_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
428.0 | [0..1] | [482..109] |
|
Region A: Residues: [1-101] |
1 11 21 31 41 51
| | | | | |
1 MASMSLSFSS SLCSSRIPEG KRRFRHRDVG IVRCVLAASK SSPGSVTKKR LWKDGEFPGI 60
61 TEPVNQRRTP IKNVKKKLDR RSKANGWVNT VTETLSDLIA K
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.565 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.565 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.450 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.450 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.402 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.402 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.317 | a.1.1 | Globin-like |
| View | Download | 0.317 | a.1.1 | Globin-like |
| View | Download | 0.296 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.282 | d.54.1 | Enolase N-terminal domain-like |
|
Region A: Residues: [102-486] |
1 11 21 31 41 51
| | | | | |
1 KQWLQALEVF DMLREQTFYQ PKEGTYMKLL VLLGKSGQPN RAQKLFDEML EEGLEPTVEL 60
61 YTALLAAYTR SNLIDDAFSI LDKMKSFPQC QPDVFTYSTL LKACVDASQF DLVDSLYKEM 120
121 DERLITPNTV TQNIVLSGYG RVGRFDQMEK VLSDMLVSTA CKPDVWTMNI ILSVFGNMGK 180
181 IDMMESWYEK FRNFGIEPET RTFNILIGSY GKKRMYDKMS SVMEYMRKLE FPWTTSTYNN 240
241 IIEAFADVGD AKNMELTFDQ MRSEGMKADT KTFCCLINGY ANAGLFHKVI SSVQLAAKFE 300
301 IPENTAFYNA VISACAKADD LIEMERVYIR MKERQCVCDS RTFEIMVEAY EKEGMNDKIY 360
361 YLEQERQKLM DRTVATKEME NLPAG
|
| Detection Method: | |
| Confidence: | 33.0 |
| Match: | 1w3bA |
| Description: | The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha. |
Matching Structure (courtesy of the PDB): |
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