YRC Public Data Repository - Protein Structure Prediction

Protein:	CR15A_ARATH
Organism:	Arabidopsis thaliana
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CR15A_ARATH.

Description	E-value	Query Range	Subject Range
gi\|85118928 - gi\|85118928\|ref\|XP_965543.1\| hypothetical protein NCU01912 [Neurospora crassa OR74A] gi\|32417248, gi\|... - gi\|32417248\|ref\|XP_329102.1\| hypothetical protein [Neurospora crassa], gi\|28927353\|gb\|EAA36307.1\| hy...	103.0	[0..11]	[138..1002]
gi\|23497477, gi\|... - gi\|23509629\|ref\|NP_702296.1\| hypothetical protein PF14_0407 [Plasmodium falciparum 3D7], gi\|23497477...	99.0	[0..17]	[136..3253]
gi\|49146397, gi\|... - gi\|49146397\|ref\|YP_025505.1\| putative phage-related minor tail protein [Caedibacter taeniospiralis],...	93.0	[0..16]	[139..11]
gi\|11358481, gi\|... - gi\|7529728\|emb\|CAB86908.1\| late embryogenesis abundant protein-like [Arabidopsis thaliana], gi\|20465...	89.0	[0..10]	[139..98]
gi\|46452267 - gi\|46452267\|gb\|AAS98217.1\| COR15a [Arabis pumila]	84.0	[0..1]	[139..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMSFSGAVL TGMASSFHSG AKQSSFGAVR VGQKTQFVVV SQRKKSLIYA AKGDGNILDD  60
   61 LNEATKKASD FVTDKTKEAL ADGEKAKDYV VEKNSETADT LGKEAEKAAA YVEEKGKEAA 120
  121 NKAAEFAEGK AGEAKDATK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.48
Match:	1xq8A
Description:	Human micelle-bound alpha-synuclein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits