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View Structure Prediction Details

Protein: GAOX2_ARATH
Organism: Arabidopsis thaliana
Length: 378 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GAOX2_ARATH.

Description E-value Query
Range
Subject
Range
gi|4164141 - gi|4164141|dbj|BAA37127.1| gibberelin 20-oxidase [Lactuca sativa]
388.0 [0..1] [375..1]

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Predicted Domain #1
Region A:
Residues: [1-378]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILCTTTSP AEKEHEPKQD LEKDQTSPLI FNPSLLNLQS QIPNQFIWPD EEKPSIDIPE  60
   61 LNVPFIDLSS QDSTLEAPRV IAEACTKHGF FLVVNHGVSE SLIADAHRLM ESFFDMPLAG 120
  121 KQKAQRKPGE SCGYASSFTG RFSTKLPWKE TLSFQFSNDN SGSRTVQDYF SDTLGQEFEQ 180
  181 FGKVYQDYCE AMSSLSLKIM ELLGLSLGVN RDYFRGFFEE NDSIMRLNHY PPCQTPDLTL 240
  241 GTGPHCDPSS LTILHQDHVN GLQVFVDNQW QSIRPNPKAF VVNIGDTFMA LSNGIFKSCL 300
  301 HRAVVNRESA RKSMAFFLCP KKDKVVKPPS DILEKMKTRK YPDFTWSMFL EFTQKHYRAD 360
  361 VNTLDSFSNW VITNNNPI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 84.522879
Match: 1w9yA
Description: The structure of ACC oxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.921320409505 bayes_pls_golite062009
binding 0.588242505102319 bayes_pls_golite062009
nucleic acid binding 0.0678642854814351 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle