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View Structure Prediction Details

Protein: LHT2_ARATH
Organism: Arabidopsis thaliana
Length: 441 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LHT2_ARATH.

Description E-value Query
Range
Subject
Range
gi|68373624 - gi|68373624|ref|XP_692242.1| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...
241.0 [0..13] [402..959]

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Predicted Domain #1
Region A:
Residues: [1-441]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNSEMSASE VAAAKQKNVD DWLPITSSRN AKWWYSAFHN VTAMVGAGVL SLPYAMSNLG  60
   61 WGPGVTIMVM SWIITLYTLW QMVEMHEIVP GKRLDRYHEL GQHAFGEKLG LWIVVPQQLI 120
  121 VEVGVDIVYM VTGGASLKKV HQLVCPDCKE IRTTFWIMIF ASVHFVISHL PNFNSISIIS 180
  181 LAAAVMSLTY STIAWAASVH KGVHPDVDYS PRASTDVGKV FNFLNALGDV AFAYAGHNVV 240
  241 LEIQATIPST PEMPSKVPMW RGVIVAYIVV AICYFPVAFL GYYIFGNSVD DNILITLEKP 300
  301 IWLIAMANMF VVIHVIGSYQ IFAMPVFDML ETVLVKKMNF NPSFKLRFIT RSLYVAFTMI 360
  361 VAICVPFFGG LLGFFGGFAF APTTYYLPCI MWLVLKKPKR FGLSWTANWF CIIVGVLLTI 420
  421 LAPIGGLRTI IINAKTYKFF S

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.21
Match: 2a65A
Description: Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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