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View Structure Prediction Details

Protein: AAP6_ARATH
Organism: Arabidopsis thaliana
Length: 481 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AAP6_ARATH.

Description E-value Query
Range
Subject
Range
gi|68373624 - gi|68373624|ref|XP_692242.1| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...
234.0 [0..23] [434..965]

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Predicted Domain #1
Region A:
Residues: [1-481]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKKKSMFVE QSFPEHEIGD TNKNFDEDGR DKRTGTWMTG SAHIITAVIG SGVLSLAWAI  60
   61 AQLGWVAGPA VLMAFSFITY FTSTMLADCY RSPDPVTGKR NYTYMEVVRS YLGGRKVQLC 120
  121 GLAQYGNLIG ITIGYTITAS ISMVAVKRSN CFHKNGHNVK CATSNTPFMI IFAIIQIILS 180
  181 QIPNFHNLSW LSILAAVMSF CYASIGVGLS IAKAAGGGEH VRTTLTGVTV GIDVSGAEKI 240
  241 WRTFQAIGDI AFAYAYSTVL IEIQDTLKAG PPSENKAMKR ASLVGVSTTT FFYMLCGCVG 300
  301 YAAFGNDAPG NFLTGFGFYE PFWLIDFANV CIAVHLIGAY QVFCQPIFQF VESQSAKRWP 360
  361 DNKFITGEYK IHVPCCGDFS INFLRLVWRT SYVVVTAVVA MIFPFFNDFL GLIGAASFWP 420
  421 LTVYFPIEMH IAQKKIPKFS FTWTWLKILS WTCFIVSLVA AAGSVQGLIQ SLKDFKPFQA 480
  481 P

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.36
Match: 2a65A
Description: Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

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