| Protein: | SIGA_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 502 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SIGA_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
402.0 | [0..1] | [502..1] |
|
Region A: Residues: [1-87] |
1 11 21 31 41 51
| | | | | |
1 MATAAVIGLN TGKRLLSSSF YHSDVTEKFL SVNDHCSSQY HIASTKSGIT AKKASNYSPS 60
61 FPSSNRHTQS AKALKESVDV ASTEKPW
|
| Detection Method: |  |
| Confidence: | 57.69897 |
| Match: | 1sigA |
| Description: | CRYSTAL STRUCTURE OF A SIGMA70 SUBUNIT FRAGMENT FROM ESCHERICHIA COLI RNA POLYMERASE |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [88-502] |
1 11 21 31 41 51
| | | | | |
1 LPNGTDKELE EECYDDDDLI SHSVEAILLL QKSMLEKSWN LSFEKAVSSE YPGKGTIRKK 60
61 KIPVITCSGI SARQRRIGAK KKTNMTHVKA VSDVSSGKQV RGYVKGVISE DVLSHVEVVR 120
121 LSKKIKSGLR LDDHKSRLKD RLGCEPSDEQ LAVSLKISRA ELQAWLMECH LAREKLAMSN 180
181 VRLVMSIAQR YDNLGAEMSD LVQGGLIGLL RGIEKFDSSK GFRISTYVYW WIRQGVSRAL 240
241 VDNSRTLRLP THLHERLGLI RNAKLRLQEK GITPSIDRIA ESLNMSQKKV RNATEAVSKV 300
301 FSLDRDAFPS LNGLPGETHH SYIADTRLEN NPWHGYDDLA LKEEVSKLIS ATLGEREKEI 360
361 IRLYYGLDKE CLTWEDISKR IGLSRERVRQ VGLVALEKLK HAARKRKMEA MILKN
|
| Detection Method: | |
| Confidence: | 68.69897 |
| Match: | 1iw7F |
| Description: | Sigma70 |
Matching Structure (courtesy of the PDB): |
|
