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View Structure Prediction Details

Protein: PROT1_ARATH
Organism: Arabidopsis thaliana
Length: 442 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PROT1_ARATH.

Description E-value Query
Range
Subject
Range
gi|68373624 - gi|68373624|ref|XP_692242.1| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...
217.0 [0..22] [395..965]

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Predicted Domain #1
Region A:
Residues: [1-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTATEAKNRK INVGDGDDVV DIEIPDTAHQ ISSDSWFQVA FVLTTGINSA YVLGYSGTIM  60
   61 VPLGWIGGVV GLLIATAISL YANTLIAKLH EFGGRRHIRY RDLAGFIYGR KAYHLTWGLQ 120
  121 YVNLFMINCG FIILAGSALK AVYVLFRDDH TMKLPHFIAI AGLICAIFAI GIPHLSALGV 180
  181 WLGVSTFLSL IYIVVAIVLS VRDGVKTPSR DYEIQGSSLS KLFTITGAAA NLVFAFNTGM 240
  241 LPEIQATVRQ PVVKNMMKAL YFQFTAGVLP MYAVTFIGYW AYGSSTSTYL LNSVNGPLWV 300
  301 KALANVSAIL QSVISLHIFA SPTYEYMDTK YGIKGNPFAI KNLLFRIMAR GGYIAVSTLI 360
  361 SALLPFLGDF MSLTGAVSTF PLTFILANHM YYKAKNNKLN AMQKLWHWLN VVFFSLMSVA 420
  421 AAIAAVRLIA VDSKNFHVFA DL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.3
Match: 2a65A
Description: Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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