| Protein: | SIGC_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 571 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SIGC_ARATH.
| Description | E-value | Query Range |
Subject Range |
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406.0 | [0..71] | [570..100] |
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401.0 | [0..71] | [570..117] |
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400.0 | [0..71] | [570..101] |
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400.0 | [0..71] | [570..118] |
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399.0 | [0..71] | [570..120] |
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399.0 | [0..71] | [570..120] |
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399.0 | [0..71] | [570..120] |
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397.0 | [0..71] | [570..120] |
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396.0 | [0..71] | [571..98] |
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396.0 | [0..71] | [570..96] |
|
Region A: Residues: [1-91] |
1 11 21 31 41 51
| | | | | |
1 MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS 60
61 LLRSDQTSFP IFVRIPMTSV VATRWSFLSS V
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.604 | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
| View | Download | 0.573 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.549 | a.74.1 | Cyclin-like |
| View | Download | 0.549 | a.74.1 | Cyclin-like |
| View | Download | 0.547 | d.68.3 | SirA-like |
| View | Download | 0.547 | d.68.3 | SirA-like |
| View | Download | 0.489 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.489 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.462 | d.68.3 | SirA-like |
| View | Download | 0.445 | d.39.1 | Dynein light chain 8 (DLC8) |
|
Region A: Residues: [92-189] |
1 11 21 31 41 51
| | | | | |
1 KEESRIYQND SLKACGCASV SPYTAQNNVY VELKDPKENI GVGSAERSYS SRSMLQYNLL 60
61 AKNLLALEET FVALDSVRME RDIMLQMGKL GAAELFKT
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| Detection Method: | |
| Confidence: | 53.09691 |
| Match: | 1sigA |
| Description: | CRYSTAL STRUCTURE OF A SIGMA70 SUBUNIT FRAGMENT FROM ESCHERICHIA COLI RNA POLYMERASE |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [190-571] |
1 11 21 31 41 51
| | | | | |
1 CLSRYRGSSI TSCLSDTTEL VDTTPNQQVF VSSRRKVKKK ARRSSVTAEN GDQSSLPIGL 60
61 RTTWNNIDVP RVRRPPKYRK KRERISRNET EMSTGVKIVA DMERIRTQLE EESGKVASLS 120
121 CWAAAAGMNE KLLMRNLHYG WYCRDELVKS TRSLVLFLAR NYRGLGIAHE DLIQAGYVGV 180
181 LQGAERFDHT RGYKFSTYVQ YWIRKSMSTM VSRHARGVHI PSSIIRTINH IQKARKTLKT 240
241 SHGIKYAADE EIAKLTGHSV KKIRAANQCL KVVGSIDKKV GDCFTTKFLE FTPDTTMESP 300
301 EEAVMRQSAR RDIHDLLEGL EPREKQVMVL RYGLQDYRPK SLEEIGKLLK VSKEWIRKIE 360
361 RRAMAKLRDQ PNAEDLRYYL NQ
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| Detection Method: | |
| Confidence: | 65.522879 |
| Match: | 1l9zH |
| Description: | DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits |
Matching Structure (courtesy of the PDB): |
|
