YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: GDL68_ARATH
Organism: Arabidopsis thaliana
Length: 348 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GDL68_ARATH.

Description E-value Query
Range
Subject
Range
gi|2832625, gi|7... - pir||T05034 hypothetical protein F13C5.140 - Arabidopsis thaliana, gi|7268691|emb|CAB78899.1| putati...
297.0 [0..32] [347..292]

Back

Predicted Domain #1
Region A:
Residues: [1-348]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEGESKALW IILATVFAVA AVAPAVHGQQ TPCYFVFGDS VFDNGNNNAL NTKAKVNYLP  60
   61 YGIDYFQGPT GRFSNGRNIP DVIAELAGFN NPIPPFAGAS QAQANIGLNY ASGAGGIREE 120
  121 TSENMGERIS LRQQVNNHFS AIITAAVPLS RLRQCLYTIN IGSNDYLNNY FLSPPTLARR 180
  181 LFNPDQYARS LISLYRIYLT QLYVLGARNV ALFGIGKIGC TPRIVATLGG GTGCAEEVNQ 240
  241 AVIIFNTKLK ALVTDFNNKP GAMFTYVDLF SGNAEDFAAL GITVGDRSCC TVNPGEELCA 300
  301 ANGPVCPDRN KFIFWDNVHT TEVINTVVAN AAFNGPIASP FNISQLVN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.28
Match: 1escA
Description: THE MOLECULAR MECHANISM OF ENANTIORECOGNITION BY ESTERASES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.471286748048633 bayes_pls_golite062009
catalytic activity 0.319044203629006 bayes_pls_golite062009
protein binding 0.0277911089352154 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle