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View Structure Prediction Details

Protein: APY2_ARATH
Organism: Arabidopsis thaliana
Length: 472 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APY2_ARATH.

Description E-value Query
Range
Subject
Range
gi|22655192 - gi|22655192|gb|AAM98186.1| unknown protein [Arabidopsis thaliana]
560.0 [0..1] [472..1]

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Predicted Domain #1
Region A:
Residues: [1-261]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAKRGIGRH ESLADKIQRH RGIILVISVP IVLIGLVLLL MPGRSISDSV VEEYSVHNRK  60
   61 GGPNSRGPKN YAVIFDAGSS GSRVHVYCFD QNLDLIPLGN ELELFLQLKP GLSAYPTDPR 120
  121 QAANSLVSLL DKAEASVPRE LRPKTHVRVG ATAGLRTLGH DASENILQAV RELLRDRSML 180
  181 KTEANAVTVL DGTQEGSYQW VTINYLLRNL GKPYSDTVGV VDLGGGSVQM AYAISEEDAA 240
  241 SAPKPLEGED SYVREMYLKG R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.522879
Match: 2j4rA
Description: No description for 2j4rA was found.

Predicted functions:

Term Confidence Notes
substrate-specific transporter activity 2.59764970470908 bayes_pls_golite062009
binding 1.68922494775364 bayes_pls_golite062009
protein binding 0.956664772028256 bayes_pls_golite062009
kinase activity 0.745749848855807 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.712286564783673 bayes_pls_golite062009
peptide binding 0.52147941626058 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.454381996342618 bayes_pls_golite062009
catalytic activity 0.296484721581333 bayes_pls_golite062009
carbohydrate kinase activity 0.0904842102388556 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [262-399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KYFLYVHSYL HYGLLAARAE ILKVSEDSEN PCIVAGYDGM YKYGGKEFKA PASQSGASLD  60
   61 ECRRITINAL KVNDTLCTHM KCTFGGVWNG GRGGGQKNMF VASFFFDRAA EAGFVDPKQP 120
  121 VATVRPMDFE KAAKKACS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [400-472]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLEEGKSTF PLVEEENLPY LCMDLVYQYT LLIDGFGLEP SQTITLVKKV KYGDQAVEAA  60
   61 WPLGSAIEAV SSP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle