YRC Public Data Repository - Protein Structure Prediction

Protein:	NAC83_ARATH
Organism:	Arabidopsis thaliana
Length:	252 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAC83_ARATH.

Description	E-value	Query Range	Subject Range
gi\|40647397, gi\|... - gi\|40647397\|gb\|AAR88435.1\| NAC domain protein [Lycopersicon esculentum], gi\|195549549\|gb\|ACG50002.1\|...	264.0	[0..9]	[251..8]
gi\|14485513 - gi\|14485513\|emb\|CAC42087.1\| putative NAC domain protein [Solanum tuberosum]	264.0	[0..9]	[251..8]
gi\|57233056 - gi\|57233056\|gb\|AAW48094.1\| NAC domain protein 1 [Capsicum annuum]	257.0	[0..6]	[244..5]
NAC2_ARATH - NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2	255.0	[0..12]	[243..5]
gi\|21105734 - gi\|21105734\|gb\|AAM34766.1\|AF509866_1 nam-like protein 3 [Petunia x hybrida]	254.0	[0..6]	[249..5]
gi\|92871467 - gi\|92871467\|gb\|ABE80455.1\| No apical meristem (NAM) protein [Medicago truncatula]	254.0	[0..6]	[247..1]
gi\|15148914 - gi\|15148914\|gb\|AAK84884.1\|AF402603_1 NAC domain protein NAC2 [Phaseolus vulgaris]	252.0	[0..6]	[244..1]
gi\|255674164, gi... - gi\|34902214\|ref\|NP_912453.1\| Hypothetical protein [Oryza sativa (japonica cultivar-group)], gi\|27452...	252.0	[0..10]	[251..2]
gi\|82400207, gi\|... - gi\|82400211\|gb\|ABB72844.1\| NAC protein 1 splice variant 2 [Elaeis guineensis], gi\|82400207\|gb\|ABB728...	249.0	[0..1]	[221..1]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNVKLVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVCSSP LPASIIPEFD VCRADPWDLP  60
   61 GNLEKERYFF STREAKYPNG NRSNRATGSG YWKATGIDKR VVTSRGNQIV GLKKTLVFYK 120
  121 GKPPHGSRTD WIMHEYRLSS SPPSSMGPTQ NWVLCRIFLK KRAGNKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.09691
Match:	1ut4A
Description:	Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [168-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDDDGDSRNL RHNNNNNSSD QIEIITTDQT DDKTKPIFFD FMRKERTTDL NLLPSSPSSD  60
   61 HASSGVTTEI FSSSDEETSS CNSFR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits