YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PAP9_ARATH
Organism: Arabidopsis thaliana
Length: 308 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAP9_ARATH.

Description E-value Query
Range
Subject
Range
PAP13_ARATH - Probable plastid-lipid-associated protein 13, chloroplastic OS=Arabidopsis thaliana GN=PAP13 PE=1 SV...
305.0 [0..1] [308..1]

Back

Predicted Domain #1
Region A:
Residues: [1-154]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALIQHGSVS GTSAVRLSFS SSVSPPSSSP PLSRVSLNFQ SEKKSCYRRM ICRAMVQDSV  60
   61 QGIPSVYARE MERLSAKESL ILAFNDAGGF EALVTGKITD MQKIDVNERI TNLERLNPTP 120
  121 RPTTSPYLEG RWSFEWFGVN TPGSLAVRVM FERF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [155-308]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSTLVSLSNM EIFIKDNNTK ATANIKLLNS IENKITLSSK LTIEGPLRMK EEYLEGLLES  60
   61 PTVIEEAVPD QLRGLLGQAT TTLQQLPEPI KDTLANGLRI PLGGTYQRFF MISYLDDEIL 120
  121 IVRDTAGVPE VLTRVETSSP MSSSSVVENL EYNS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle