YRC Public Data Repository - Protein Structure Prediction

Protein:	Y3272_ARATH
Organism:	Arabidopsis thaliana
Length:	426 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y3272_ARATH.

Description	E-value	Query Range	Subject Range
gi\|194210312 - gi\|194210312\|ref\|XP_001493064.2\| PREDICTED: kelch-like 20 (Drosophila) [Equus caballus] KLHL20 - kelch-like 20 (Drosophila) KLH20_RAT - Kelch-like protein 20 OS=Rattus norvegicus GN=Klhl20 PE=3 SV=1 gi\|73960600 - gi\|73960600\|ref\|XP_537188.2\| PREDICTED: similar to kelch-like 20 isoform 1 [Canis familiaris] gi\|114565500, gi... - gi\|114565500\|ref\|XP_514005.2\| PREDICTED: kelch-like 20 isoform 3 [Pan troglodytes], gi\|114565498\|ref... KLH20_BOVIN - Kelch-like protein 20 OS=Bos taurus GN=KLHL20 PE=2 SV=3 ENSCJAT00000018058 - null	343.0	[0..23]	[424..223]

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Predicted Domain #1

Region A:
Residues: [1-426]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANKPDHHHH HHQSSRRLML VLYFTSVLGI GFIAAFLCLS SSIPSVSAVF SIWVPVNRPE  60
   61 IQIPIIDSKI VQKRSKQSND TKDHVRFLSA IFADIPAPEL KWEEMESAPV PRLDGYSVQI 120
  121 NNLLYVFSGY GSLDYVHSHV DVFNFTDNKW CDRFHTPKEM ANSHLGIVTD GRYVYVVSGQ 180
  181 LGPQCRGPTS RSFVLDSFTK TWLEFPSLPA PRYAPATQIW RGRLHVMGGS KENRNAVAFD 240
  241 HWSIAVKDGK ALDEWREEVP IPRGGPHRAC VVANDKLLVI GGQEGDFMAK PNSPIFKCSR 300
  301 RREIFNGEVY MMDEEMKWKM LPPMPKNNSH IESAWIIVNN SIVIVGGTTD WHPVTKRLVL 360
  361 VGEIFRFQLD TLTWSVIGRL PYRVKTAMAG FWNGYLYFTS GQRDRGPDNP QPGKVIGEMW 420
  421 RTKLKF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.045757
Match:	1x2jA
Description:	Structural basis for the defects of human lung cancer somatic mutations in the repression activity of Keap1 on Nrf2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits