YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7270412, gi\|3...
Organism:	Arabidopsis thaliana
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7270412, gi|3....

Description	E-value	Query Range	Subject Range
gi\|113624216, gi... - gi\|34905148\|ref\|NP_913921.1\| 30S ribosomal protein S16-like [Oryza sativa (japonica cultivar-group)]... gi\|125562195 - gi\|125562195\|gb\|EAZ07643.1\| hypothetical protein OsI_29894 [Oryza sativa Indica Group]	146.0	[0..1]	[113..1]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVKIRLARL GCKHRPFYRV VVADEKSRRD GKQIEVLGFY DPLQGKEDAD RVSLKFDRIK  60
   61 YWLSVGAQPT DTVESMLFRA GLIPPKPMVV VGSKNGQKST SQHVSPITGE ILN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.154902
Match:	2uu9P
Description:	No description for 2uu9P was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits