YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ERS1_ARATH
Organism: Arabidopsis thaliana
Length: 613 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERS1_ARATH.

Description E-value Query
Range
Subject
Range
gi|7547007, gi|1... - gi|7547007|gb|AAF63755.1|AF243474_1 putative ethylene receptor [Vitis vinifera], gi|157357089|emb|CA...
544.0 [0..1] [604..1]

Back

Predicted Domain #1
Region A:
Residues: [1-105]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESCDCFETH VNQDDLLVKY QYISDALIAL AYFSIPLELI YFVQKSAFFP YKWVLMQFGA  60
   61 FIILCGATHF INLWMFFMHS KAVAIVMTIA KVSCAVVSCA TALML

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [106-336]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VHIIPDLLSV KNRELFLKKK ADELDREMGL ILTQEETGRH VRMLTHGIRR TLDRHTILRT  60
   61 TLVELGKTLC LEECALWMPS QSGLYLQLSH TLSHKIQVGS SVPINLPIIN ELFNSAQAMH 120
  121 IPHSCPLAKI GPPVGRYSPP EVVSVRVPLL HLSNFQGSDW SDLSGKGYAI MVLILPTDGA 180
  181 RKWRDHELEL VENVADQVAV ALSHAAILEE SMHARDQLME QNFALDKARQ E

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.83
Match: 1ykdA
Description: Crystal Structure of the Tandem GAF Domains from a Cyanobacterial Adenylyl Cyclase: Novel Modes of Ligand-Binding and Dimerization
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [337-613]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEMAVHARND FLAVMNHEMR TPMHAIISLS SLLLETELSP EQRVMIETIL KSSNLVATLI  60
   61 SDVLDLSRLE DGSLLLENEP FSLQAIFEEV ISLIKPIASV KKLSTNLILS ADLPTYAIGD 120
  121 EKRLMQTILN IMGNAVKFTK EGYISIIASI MKPESLQELP SPEFFPVLSD SHFYLCVQVK 180
  181 DTGCGIHTQD IPLLFTKFVQ PRTGTQRNHS GGGLGLALCK RFVGLMGGYM WIESEGLEKG 240
  241 CTASFIIRLG ICNGPSSSSG SMALHLAAKS QTRPWNW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.522879
Match: 2c2aA
Description: Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle