| Protein: | PME5_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 595 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PME5_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
563.0 | [0..1] | [595..1] |
|
|
533.0 | [0..3] | [595..19] |
|
|
528.0 | [0..3] | [595..15] |
|
|
527.0 | [0..3] | [595..18] |
|
|
523.0 | [0..3] | [595..15] |
|
|
519.0 | [0..3] | [595..15] |
|
Region A: Residues: [1-202] |
1 11 21 31 41 51
| | | | | |
1 MIGKVVVSVA SILLIVGVAI GVVAYINKNG DANLSPQMKA VRGICEATSD KASCVKTLEP 60
61 VKSDDPNKLI KAFMLATRDA ITQSSNFTGK TEGNLGSGIS PNNKAVLDYC KKVFMYALED 120
121 LSTIVEEMGE DLNQIGSKID QLKQWLTGVY NYQTDCLDDI EEDDLRKTIG EGIASSKILT 180
181 SNAIDIFHTV VSAMAKLNLK VE
|
| Detection Method: |  |
| Confidence: | 21.154902 |
| Match: | 1xg2B |
| Description: | Crystal structure of the complex between pectin methylesterase and its inhibitor protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [203-268] |
1 11 21 31 41 51
| | | | | |
1 DFKNMTGGIF APSDKGAAPV NKGTPPVADD SPVADPDGPA RRLLEDIDET GIPTWVSGAD 60
61 RKLMTK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.319 | a.182.1 | GatB/YqeY domain |
| View | Download | 0.289 | a.35.1 | lambda repressor-like DNA-binding domains |
|
Region A: Residues: [269-595] |
1 11 21 31 41 51
| | | | | |
1 AGRGSNDGGA RIRATFVVAK DGSGQFKTVQ QAVNACPEKN PGRCIIHIKA GIYREQVIIP 60
61 KKKNNIFMFG DGARKTVISY NRSVKLSPGT TTSLSGTVQV ESEGFMAKWI GFKNTAGPMG 120
121 HQAVAIRVNG DRAVIFNCRF DGYQDTLYVN NGRQFYRNIV VSGTVDFIFG KSATVIQNSL 180
181 IVVRKGNKGQ FNTVTADGNE KGLAMKIGIV LQNCRIVPDK KLAAERLIVE SYLGRPWKKF 240
241 STTVIINSEI GDVIRPEGWK IWDGESFHKS CRYVEYNNRG PGAITNRRVN WVKIARSAAE 300
301 VNDFTVANWL GPINWIQEAN VPVTLGL
|
| Detection Method: | |
| Confidence: | 101.0 |
| Match: | 1gq8A |
| Description: | Pectin methylesterase PemA |
Matching Structure (courtesy of the PDB): |
|
