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View Structure Prediction Details

Protein: U603_ARATH
Organism: Arabidopsis thaliana
Length: 285 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for U603_ARATH.

Description E-value Query
Range
Subject
Range
gi|25359462 - pir||AE2318 hypothetical protein alr4100 [imported] - Nostoc sp. (strain PCC 7120)
gi|17133235, gi|... - gi|17231592|ref|NP_488140.1| hypothetical protein alr4100 [Nostoc sp. PCC 7120], gi|17133235|dbj|BAB...
206.0 [0..55] [283..12]

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Predicted Domain #1
Region A:
Residues: [1-90]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METLLSPRAL SPPLNPKPLS LHQTKPTSHS LSLSKPTTFS GPKHLSTRFT KPESRNWLID  60
   61 AKQGLAALAL SLTLTFSPVG TALASEFNIL 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [91-285]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDGPPKETYV VDDAGVLSRV TKSDLKKLLS DLEYRKKLRL NFITVRKLTS KADAFEYADQ  60
   61 VLEKWYPSIE EGNNKGIVVL ITSQKEGAIT GGPAFIEAVG ENILDATVSE NLPVLATDEK 120
  121 YNEAVYSSAK RLVAAIDGQP DPGGPTVKDS KRESNFKTKE ETDEKRGQFS LVVGGLLVIA 180
  181 FVVPMAQYFA YVSRK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 27.468521
Match: PF04536.5
Description: No description for PF04536.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle