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View Structure Prediction Details

Protein: CIPKC_ARATH
Organism: Arabidopsis thaliana
Length: 489 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CIPKC_ARATH.

Description E-value Query
Range
Subject
Range
gi|49333397 - gi|49333397|gb|AAT64036.1| putative serine-threonine kinase [Gossypium hirsutum]
376.0 [0..3] [456..5]

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Predicted Domain #1
Region A:
Residues: [1-352]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKITRETS LPKERSSPQA LILGRYEMGK LLGHGTFAKV YLARNVKTNE SVAIKVIDKE  60
   61 KVLKGGLIAH IKREISILRR VRHPNIVQLF EVMATKAKIY FVMEYVRGGE LFNKVAKGRL 120
  121 KEEVARKYFQ QLISAVTFCH ARGVYHRDLK PENLLLDENG NLKVSDFGLS AVSDQIRQDG 180
  181 LFHTFCGTPA YVAPEVLARK GYDAAKVDIW SCGVILFVLM AGYLPFHDRN VMAMYKKIYR 240
  241 GEFRCPRWFS TELTRLLSKL LETNPEKRFT FPEIMENSWF KKGFKHIKFY VEDDKLCNVV 300
  301 DDDELESDSV ESDRDSAASE SEIEYLEPRR RVGGLPRPAS LNAFDIISFS QG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.39794
Match: 1zmuA
Description: Catalytic and ubiqutin-associated domains of MARK2/PAR-1: Wild type
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [353-489]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDLSGLFDDD GEGSRFVSGA PVSKIISKLE EIAKVVSFTV RKKDCRVSLE GSRQGVKGPL  60
   61 TIAAEIFELT PSLVVVEVKK KGGDKTEYED FCNNELKPKL QNLTADDVVA EPVAVSAVDE 120
  121 TAIPNSPTIS FLPSDTE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.0
Match: 2ehbD
Description: No description for 2ehbD was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle