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View Structure Prediction Details

Protein: gi|4587528, gi|2...
Organism: Arabidopsis thaliana
Length: 527 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4587528, gi|2....

Description E-value Query
Range
Subject
Range
gi|72119885, gi|... - gi|73542472|ref|YP_296992.1| FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal [Ralstoni...
354.0 [0..25] [527..2]

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Predicted Domain #1
Region A:
Residues: [1-527]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLLVISLL LLISTSVTTS QSVTDPIAFL RCLDRQPTDP TSPNSAVAYI PTNSSFTTVL  60
   61 RSRIPNLRFD KPTTPKPISV VAAATWTHIQ AAVGCARELS LQVRIRSGGH DFEGLSYTST 120
  121 VPFFVLDMFG FKTVDVNLTE RTAWVDSGAT LGELYYRISE KSNVLGFPAG LSTTLGVGGH 180
  181 FSGGGYGNLM RKYGLSVDNV FGSGIVDSNG NIFTDRVSMG EDRFWAIRGG GAASYGVVLG 240
  241 YKIQLVPVPE KVTVFKVGKT VGEGAVDLIM KWQSFAHSTD RNLFVRLTLT LVNGTKPGEN 300
  301 TVLATFIGMY LGRSDKLLTV MNRDFPELKL KKTDCTEMRW IDSVLFWDDY PVGTPTSVLL 360
  361 NPLVAKKLFM KRKSDYVKRL ISRTDLGLIL KKLVEVEKVK MNWNPYGGRM GEIPSSRTPF 420
  421 PHRAGNLFNI EYIIDWSEAG DNVEKKYLAL ANEFYRFMTP YVSSNPREAF LNYRDLDIGS 480
  481 SVKSTYQEGK IYGAKYFKEN FERLVDIKTT IDAENFWKNE QSIPVRR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.69897
Match: 2bvfA
Description: Crystal structure of 6-hydoxy-D-nicotine oxidase from Arthrobacter nicotinovorans. Crystal Form 3 (P21)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle