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View Structure Prediction Details

Protein: Y2369_ARATH
Organism: Arabidopsis thaliana
Length: 544 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y2369_ARATH.

Description E-value Query
Range
Subject
Range
gi|21553858 - gi|21553858|gb|AAM62951.1| unknown [Arabidopsis thaliana]
692.0 [0..3] [544..1]
gi|115470399, gi... - gi|115470399|ref|NP_001058798.1| Os07g0123500 [Oryza sativa (japonica cultivar-group)], gi|113610334...
gi|125557084 - gi|125557084|gb|EAZ02620.1| hypothetical protein OsI_023852 [Oryza sativa (indica cultivar-group)]
592.0 [0..48] [540..74]
gi|38230508 - gi|38230508|gb|AAR14275.1| predicted protein [Populus alba x Populus tremula]
583.0 [0..33] [544..18]

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Predicted Domain #1
Region A:
Residues: [1-141]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMGDSDLRK PTNFGTGHLS RRRSWCCSFA VPPASPDTRS ISSRNHIPAK SQQQRPKLVP  60
   61 CSPQSSKSAL NIVNRIDPRR ILSPGRVSPI DSDPTVTTMQ ETETTQEEED DAVVVDSTPN 120
  121 LRSESFRAPK IEVTGSGLSE G

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [142-316]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YDARLSLKGR NGGGVLVLEL SLEVLAANSD VFSGLIAEEK KCSSSSSSLG LKNTCRIEVC  60
   61 DVENLGVFRE TVELMFEESN VIIKKFMTMG VYRAIDVLEV AAGIKFSRAV LSCLKYLEAV 120
  121 PWTEDEEEKL RRLLGIYSFD DDAVSEILAR FNSNETENLQ DSLSKKLVWS ITSCS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.7
Match: 2ppiA
Description: No description for 2ppiA was found.

Predicted Domain #3
Region A:
Residues: [317-374]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVNPRNELKS LVKGLLCKSS VYEKEQPEIN KEDIYRAGKC CVDSLAKLFE EGSSSSSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [375-544]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKEKPLIESI SREVENINWL LEIMIDREIA EEFVEIWGKQ RRLVEMHERV SPMVRYEVSR  60
   61 VTGAIFIAMG KRRVQCGGEA RAGLVEAWFK PMLVDFGWLQ RCKKGLDMRE VEEGMGQTLL 120
  121 TLPVKEQYQV FMEWFRWFSK HGTECPNLSK AFQIWWRRSF LRGVESSTCR 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle