| Protein: | RIBA3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 509 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIBA3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
619.0 | [0..19] | [504..31] |
|
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607.0 | [0..18] | [502..35] |
|
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590.0 | [0..101] | [499..9] |
|
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586.0 | [0..38] | [504..51] |
|
|
579.0 | [0..67] | [499..76] |
|
|
575.0 | [0..102] | [503..2] |
|
|
572.0 | [0..99] | [500..1] |
|
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571.0 | [0..101] | [501..7] |
|
|
571.0 | [0..100] | [501..7] |
|
|
571.0 | [0..99] | [500..1] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MMDSALYHPR IFFAHSFING LYSSPRFANT CWRLVSRSSW EIKASENSDR NVFDENPVRK 60
61 TDGSLFDSAS FETVDAEITP ETDDFFVSDA EGDPDC
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.580 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.500 | c.47.1 | Thioredoxin-like |
| View | Download | 0.426 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.426 | a.4.1 | Homeodomain-like |
| View | Download | 0.396 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.385 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.385 | a.39.4 | Hypothetical protein MTH865 |
| View | Download | 0.385 | a.39.4 | Hypothetical protein MTH865 |
| View | Download | 0.363 | c.47.1 | Thioredoxin-like |
| View | Download | 0.250 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.232 | d.254.1 | Description not found. |
| View | Download | 0.220 | a.74.1 | Cyclin-like |
|
Region A: Residues: [97-304] |
1 11 21 31 41 51
| | | | | |
1 PTQGYSSIEL ALQALRKGKF VIVVDDETGD VEGNLIMAAT LTSPKDIAFL IKNGSGIVSV 60
61 GMKKENLERL SLTLMSPEME DEDSSAPTFT ITVDAKSGTS TGVSASDRAM TVLALSSLDA 120
121 KPDDFRRPGH VFPLKYRDGG VLRRAGHTEA SVDLMILAGL RPLSVLSAIL DQEDGSMASL 180
181 PYMKKLATEH DIPIVSLTDL IRYRRKRD
|
| Detection Method: | |
| Confidence: | 72.69897 |
| Match: | 1iezA |
| Description: | 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [305-509] |
1 11 21 31 41 51
| | | | | |
1 KLVERITVSR LPTKWGLFQA YCYRSKLDGT ENIALVKGNV GNGEDILVRV HSECLTGDIF 60
61 GSARCDCGNQ LDLAMELIEK EGRGVVVYLR GHEGRGIGLG HKLRAYNLQD EGHDTVQANV 120
121 ELGLSIDSRE YGIGAQMLRD IGVRTMRLMT NNPAKFTGLK GYGLAVVGRV PVVTPITKEN 180
181 RRYMETKRKK MGHIYISDNN DQPLA
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| Detection Method: | |
| Confidence: | 72.69897 |
| Match: | 2bz0A |
| Description: | Crystal Structure of E. coli GTP cyclohydrolase II in complex with GTP analogue, GMPcPP, and Zinc |
Matching Structure (courtesy of the PDB): |
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