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View Structure Prediction Details

Protein: gi|18402538, gi|...
Organism: Arabidopsis thaliana
Length: 187 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18402538, gi|....

Description E-value Query
Range
Subject
Range
RL18_CARHZ - 50S ribosomal protein L18 OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2...
162.0 [0..64] [185..3]

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Predicted Domain #1
Region A:
Residues: [1-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCLISSTCS LVPFDSNLTR SNRFTKLGSA VSWQSSFPKL SIEIGSVISS PIVKKDSFVQ  60
   61 AAWTRRSRGE AAKRPNRKSW KQRTDMYMRP FLLNVFFSRK FIHAKVMHRP TSKVISVATT 120
  121 NARDIRTNIP SLVDNEACRL IGKLIAERSM EADVYAVSYE PRKGERIEGK LGIVIDTIKE 180
  181 HGIIFVP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.30103
Match: 1ovyA
Description: Solution Structure of Ribosomal Protein L18 from Bacillus stearothermophilus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural molecule activity 0.48427395152925 bayes_pls_golite062009
structural constituent of ribosome 0.478479888797851 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle