YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23296404, gi\|...
Organism:	Arabidopsis thaliana
Length:	278 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23296404, gi|....

Description	E-value	Query Range	Subject Range
gi\|108808641, gi... - gi\|108808641\|ref\|YP_652557.1\| DNA-binding ATP-dependent protease La [Yersinia pestis Antiqua], gi\|10... gi\|145600050, gi... - gi\|145600050\|ref\|YP_001164126.1\| DNA-binding ATP-dependent protease La [Yersinia pestis Pestoides F]... gi\|22124936, gi\|... - gi\|22124936\|ref\|NP_668359.1\| DNA-binding ATP-dependent protease La [Yersinia pestis KIM], gi\|2195777... gi\|45435482, gi\|... - gi\|45440625\|ref\|NP_992164.1\| DNA-binding ATP-dependent protease La [Yersinia pestis biovar Microtus ... gi\|108774748, gi... - gi\|108811100\|ref\|YP_646867.1\| DNA-binding ATP-dependent protease La [Yersinia pestis Nepal516], gi\|1...	246.0	[0..46]	[276..1]

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Predicted Domain #1

Region A:
Residues: [1-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPHVVSSP SSTSLSPSFK SKPPFHSLRS LSPTVDNRRR CKLNSSFRCS SSSFSEKHHN  60
   61 AKSPKSDDIV ELPLFPLPLV LFPGAILPLQ IFEFRYRIMM HTLLQSDLRF GVVYSDSVSG 120
  121 SAAEVGCVGE VVKHERLVDD RFFLVCKGQE RFRVTNVVRT KPYLVGEVTW LEDRPSGEEN 180
  181 LDSLANEVEV LMKEVIRLSN RLNGKAEKEV QDLRRNQFPT PFSFFVGSTF EGAPREQQAL 240
  241 LELEDTAARL KRERETLRNT LNYLTAASAV KDVFPSSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.39794
Match:	1zboA
Description:	Crystal Structure of the Hypothetical Protein BPP1347 from Bordetella parapertussis, Northeast Structural Genomics Target BoR27.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits