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View Structure Prediction Details

Protein: PUP18_ARATH
Organism: Arabidopsis thaliana
Length: 390 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUP18_ARATH.

Description E-value Query
Range
Subject
Range
PUP17_ARATH - Probable purine permease 17 OS=Arabidopsis thaliana GN=PUP17 PE=2 SV=2
178.0 [0..1] [390..1]

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Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMTEASKQT TAEGSANPEP DQILSPRRSL ELKQKKWWIS VSLCIFLVLL GDSLVMLLLN  60
   61 FFYVQDNRED SDQDLQYRGT WLQALVQNAA FPLLIPLFFI FPSP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [105-243]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQNQETTNTR FLSFRLILLY ISLGVLVAAH SKLFALGKLY ANFGVFTLIS ATQLIFTAIF  60
   61 AAIINRFKFT RWIILSIIGS ILIYVFGSPE FGGEPDENEE FYSIQAWLTF AASVAFALSL 120
  121 CLFQLCFEKV LVKTKRYGN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.97
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #3
Region A:
Residues: [244-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKVFRMVIEM QICVSFVATV VCLVGLFASG ENKELQGDSH RFKKGETYYV LSLIGLALSW  60
   61 QVWAVGLMGL VLYVSGVFGD VVHMCTSPLV ALFVVLAFDF MDDEFSWPRI GTLIATVVAL 120
  121 GSYFYTLHKR NKKKMVELYQ TENNIDV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle