YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CER26_ARATH
Organism: Arabidopsis thaliana
Length: 428 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CER26_ARATH.

Description E-value Query
Range
Subject
Range
gi|23125759 - gi|23125759|ref|ZP_00107678.1| COG1020: Non-ribosomal peptide synthetase modules and related protein...
300.0 [0..8] [428..2741]

Back

Predicted Domain #1
Region A:
Residues: [1-428]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSQEQGQG QGPVHSIRLS TVGATRPTET GTTHEPTGLD LAMKLHYLKA AYIYSAETAR  60
   61 DLTVRHLKEA MFMLFDQIAW TTGRFSRRDS GRPYIKCNDC GTRFVEGQCN LTVEEWLSKP 120
  121 DRSVDEFLVY HHPIGPELTF SPLIYVQMTR FKCGGLGLGL SWANIIGDAF SLFYAFNLWA 180
  181 KAITGEKIYA PTTPSIGERR FQSPNPTVKD PVSIKRVEPV GDLWVTPNDK KLANYCFNLS 240
  241 VADQISPHFP AKGDDSIPVF EILAGIIWKC IAKVRVEPKP VTVTIIKKDP NDLKLNAIRN 300
  301 SQVISSVSVD FPVAEATVEE LVKAMGEAKD ERCGIEEIGE SCDGNLDFVV YGAKLTFLDL 360
  361 TGEDLYEAKV MGKSPESVYC NVEGIGEEGL VVVYAAAKSE ERVVTVTLPE EEMERVKLEF 420
  421 KKFGLIAP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.0
Match: 2bghA
Description: Crystal structure of Vinorine Synthase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle