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View Structure Prediction Details

Protein: gi|7573407, gi|1...
Organism: Arabidopsis thaliana
Length: 215 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7573407, gi|1....

Description E-value Query
Range
Subject
Range
gi|109086042 - gi|109086042|ref|XP_001110749.1| PREDICTED: similar to coiled-coil domain containing 25 isoform 1 [M...
265.0 [0..1] [215..195]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFYFKARPD AGDYTIFMGL DKFENEELIK YGFPEDVWFH VDKMSSAHVY LRLHRGQSFD  60
   61 DISEGVLEDC AQLVKANSIQ GNKVNNVDVV YTPWSNLKKT ASMDVGQVGF HNSKMVRTIR 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 29.823909
Match: PF05670.4
Description: No description for PF05670.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.796 N/A N/A d.109.1 Actin depolymerizing proteins
View Download 0.658 N/A N/A d.109.1 Actin depolymerizing proteins
View Download 0.624 N/A N/A d.13.1 HIT-like
View Download 0.616 N/A N/A d.13.1 HIT-like
View Download 0.611 N/A N/A d.21.1 Diaminopimelate epimerase-like

Predicted Domain #2
Region A:
Residues: [121-215]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEKRVNEIVN RLNKTKVERT PDLRAEREAV NAAERAERKQ HLREKKKREE IDRLEKERQS  60
   61 EMRSYKGLMV TDKMTSNKDI ASSNKSLQEL EDDFM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.847 N/A N/A a.7.6 Ribosomal protein S20
View Download 0.539 N/A N/A a.61.1 Retroviral matrix proteins
View Download 0.527 N/A N/A a.7.6 Ribosomal protein S20
View Download 0.507 N/A N/A a.7.6 Ribosomal protein S20
View Download 0.505 N/A N/A a.52.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle