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View Structure Prediction Details

Protein: FB285_ARATH
Organism: Arabidopsis thaliana
Length: 395 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FB285_ARATH.

Description E-value Query
Range
Subject
Range
FB237_ARATH - F-box protein At4g18380 OS=Arabidopsis thaliana GN=At4g18380 PE=2 SV=1
535.0 [0..1] [395..1]

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Predicted Domain #1
Region A:
Residues: [1-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS  60
   61 LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA IFRLVVGGIV KPLQALGQFL 120
  121 GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG 180
  181 ELGIDDGVLL KWRAEFGSTL DNCVILGASS VIPPNPM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.69897
Match: 1fqvA
Description: Skp2; Cyclin A/CDK2-associated p19, Skp2
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [218-395]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVSQACDTTT VVEAPGSGSD DNGSIPESFY TNGGLKLRVV WTISSLIAAS ARHYLLQPII  60
   61 AEHKTLDSLV LTDSDGQGVL CMNRDQLEEL RVKPLAASSA SKRTLVPALN MRLWYAPTLE 120
  121 LPDGTVLKGA TLVAIRPSES KKEVSDISWV SSAFEEPYET AAKMLVKRRT YCLEMNSF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle