YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23198350, gi\|...
Organism:	Arabidopsis thaliana
Length:	252 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23198350, gi|....

Description	E-value	Query Range	Subject Range
RWDD1_RAT - RWD domain-containing protein 1 OS=Rattus norvegicus GN=Rwdd1 PE=2 SV=1	194.0	[0..1]	[246..1]
RWDD1_MOUSE - RWD domain-containing protein 1 OS=Mus musculus GN=Rwdd1 PE=1 SV=1	193.0	[0..1]	[246..1]
gi\|215694384, gi... - gi\|57900420\|dbj\|BAD87656.1\| RWD domain containing 1-like protein [Oryza sativa Japonica Group], gi\|5...	188.0	[0..1]	[247..1]
gi\|77999283 - gi\|77999283\|gb\|ABB16988.1\| RWD domain-containing protein [Solanum tuberosum]	171.0	[0..1]	[247..1]
gi\|5138918 - gi\|5138918\|gb\|AAD40376.1\| PTD013 [Homo sapiens]	170.0	[0..1]	[246..1]
gi\|77736397, gi\|... - gi\|77736397\|ref\|NP_001029898.1\| RWD domain containing 1 [Bos taurus], gi\|73586715\|gb\|AAI02911.1\| RWD...	168.0	[0..1]	[221..1]
gi\|149722898 - gi\|149722898\|ref\|XP_001504175.1\| PREDICTED: similar to small androgen receptor-interacting protein [... gi\|73945825 - gi\|73945825\|ref\|XP_851223.1\| PREDICTED: similar to small androgen receptor-interacting protein isofo...	166.0	[0..1]	[244..1]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEYKQEQEM EIEALEAILM DEFKEIHSSE SGLNTSNRCF QITVTPQDDE LEELAIPPVQ  60
   61 LALVFSHTEN YPDEAPLLDV KSIRGIHVSD LTILKEKLEQ EASENLGMAM IYTLVSSAKD 120
  121 WLSEHYG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.045757
Match:	1ukxA
Description:	Solution structure of the RWD domain of mouse GCN2
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [128-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDDAAEFAEV EAAKEDEVIV PHGEPVTLET FLAWRERYEA ELALERAKLM PESALTAPKE  60
   61 KKLTGRQWFE SGRGRGTVVI ADEEDEEEDE EDIDFEDEDF EDDEEDMLEH YLAEKSDSSA 120
  121 PPTRT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits