| Protein: | SRO1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 568 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRO1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
535.0 | [0..1] | [568..1] |
|
|
418.0 | [0..1] | [567..1] |
|
|
357.0 | [0..1] | [464..221] |
|
|
356.0 | [0..1] | [464..216] |
|
Region A: Residues: [1-94] |
1 11 21 31 41 51
| | | | | |
1 MEAKIVKVSD SSYKDGLGKK RKHPGNYTPY DSGRSYAKLQ WVLSPNSSTQ KLEKRRNLDG 60
61 ENKVIVSENH VEKSLVRYFS YYKKTGVPKR VMFH
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.303 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.273 | N/A | N/A | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.273 | N/A | N/A | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.232 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.232 | N/A | N/A | a.4.12 | TrpR-like |
| View | Download | 0.222 | N/A | N/A | d.311.1 | Description not found. |
|
Region A: Residues: [95-447] |
1 11 21 31 41 51
| | | | | |
1 ENGEWIDLPD HILCDIRNDL EAKRATIEFN WCGRHFLLDF LHMYRLDLET GVKTQLAWID 60
61 IAGKCFFPET FDTLERDGCH HIRGEDPEQH DQREIKLHIE IDVNSGELPR LNLNVVTDES 120
121 GDNMDDFQAV QRSSNGPNDE ASEDSCSREL DDAVEKWDKT ETDRFSGVKP AEEELDKDAV 180
181 KQMFALGAAT LGHVESLDVY QFSSEIAKAR LSLFQKQADI TKKHRGDANI RYAWVPAKKE 240
241 VLSAVMMHGL GVGGAFIKKS MYGVGVHAAN CPYFSARYCD IDDNGVRHMV LCRVIMGNME 300
301 PLRGDNTQYF TGGEEYDNGV DDVESPKHYL IWNMNMNTHI YPEFVVSFKL SIP
|
| Detection Method: | |
| Confidence: | 75.69897 |
| Match: | 1a26A |
| Description: | THE CATALYTIC FRAGMENT OF POLY(ADP-RIBOSE) POLYMERASE COMPLEXED WITH CARBA-NAD |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [448-568] |
1 11 21 31 41 51
| | | | | |
1 NAEGNILPTT QSRHESSGLT LEGPKGSPSN EPGRVSNGGS GSEKNSSSSR RPRSPIMPFP 60
61 LLFKAISSKI ARKDMDLIIA GYQELREKKV SRKEFYKTLS MIVGDDDLLI STITGLQRSL 120
121 G
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.874 | a.226.1 | Description not found. |
| View | Download | 0.742 | a.226.1 | Description not found. |
| View | Download | 0.715 | a.226.1 | Description not found. |
| View | Download | 0.697 | a.226.1 | Description not found. |
| View | Download | 0.627 | b.81.1 | Trimeric LpxA-like enzymes |
| View | Download | 0.458 | a.79.1 | Antitermination factor NusB |
| View | Download | 0.363 | a.79.1 | Antitermination factor NusB |
