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View Structure Prediction Details

Protein: gi|3892708, gi|7...
Organism: Arabidopsis thaliana
Length: 261 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3892708, gi|7....

Description E-value Query
Range
Subject
Range
gi|21594033 - gi|21594033|gb|AAM65951.1| embryonic abundant protein-like [Arabidopsis thaliana]
158.0 [0..1] [261..1]

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Predicted Domain #1
Region A:
Residues: [1-261]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGVYDSQAD IYLDARPTYP ADWYSKLAAL SHRHNLAWDA GTGNGQAAIG IAEHYERVVA  60
   61 TDVSETMLNL GKPHPKVTYH HTPSSMTEDE MVDLIGGENS VDLITVATAV HWFDLPRFYA 120
  121 IANRLLRKPG GIIAVWSYNT DMVVNPEFDS VMTRFIAETL PYCKFPESQY FLDGYKTLPF 180
  181 PFESVGLGSE GKPMELEMKK TVSFEGFLRM LRSWSAVGAA KEKGVDLLSD NVVKELETAW 240
  241 GGYELVRTIV YKTFMLAGTV P

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.39794
Match: 2avnA
Description: Crystal structure of Ubiquinone/menaquinone biosynthesis methyltransferase-related protein (tm1389) from THERMOTOGA MARITIMA at 2.35 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transferase activity 0.569065423404044 bayes_pls_golite062009
catalytic activity 0.486907672100804 bayes_pls_golite062009
methyltransferase activity 0.155495931533276 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.145822362574272 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle