YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: MSL10_ARATH
Organism: Arabidopsis thaliana
Length: 734 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSL10_ARATH.

Description E-value Query
Range
Subject
Range
gi|15231928 - gi|15231928|ref|NP_188099.1| mechanosensitive ion channel domain-containing protein / MS ion channel...
487.0 [0..11] [732..100]

Back

Predicted Domain #1
Region A:
Residues: [1-159]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEQKSSNGG GGGGDVVINV PVEEASRRSK EMASPESEKG VPFSKSPSPE ISKLVGSPNK  60
   61 PPRAPNQNNV GLTQRKSFAR SVYSKPKSRF VDPSCPVDTS ILEEEVREQL GAGFSFSRAS 120
  121 PNNKSNRSVG SPAPVTPSKV VVEKDEDEEI YKKVKLNRE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.522879
Match: 1y0fA
Description: No description for 1y0fA was found.

Predicted Domain #2
Region A:
Residues: [160-379]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSKISTLAL IESAFFVVIL SALVASLTIN VLKHHTFWGL EVWKWCVLVM VIFSGMLVTN  60
   61 WFMRLIVFLI ETNFLLRRKV LYFVHGLKKS VQVFIWLCLI LVAWILLFNH DVKRSPAATK 120
  121 VLKCITRTLI SILTGAFFWL VKTLLLKILA ANFNVNNFFD RIQDSVFHQY VLQTLSGLPL 180
  181 MEEAERVGRE PSTGHLSFAT VVKKGTVKEK KVIDMGKVHK 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [380-734]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKREKVSAWT MRVLMEAVRT SGLSTISDTL DETAYGEGKE QADREITSEM EALAAAYHVF  60
   61 RNVAQPFFNY IEEEDLLRFM IKEEVDLVFP LFDGAAETGR ITRKAFTEWV VKVYTSRRAL 120
  121 AHSLNDTKTA VKQLNKLVTA ILMVVTVVIW LLLLEVATTK VLLFFSTQLV ALAFIIGSTC 180
  181 KNLFESIVFV FVMHPYDVGD RCVVDGVAML VEEMNLLTTV FLKLNNEKVY YPNAVLATKP 240
  241 ISNYFRSPNM GETVEFSISF STPVSKIAHL KERIAEYLEQ NPQHWAPVHS VVVKEIENMN 300
  301 KLKMALYSDH TITFQENRER NLRRTELSLA IKRMLEDLHI DYTLLPQDIN LTKKN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.09691
Match: 2oauA
Description: No description for 2oauA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle