YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12322201, gi\|...
Organism:	Arabidopsis thaliana
Length:	601 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12322201, gi|....

Description	E-value	Query Range	Subject Range
MIAB_GEOKA - (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB OS=Geobacillus kaustophilus GN=miaB PE=3 SV... MIAB_GEOKA - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Geobacillus kaustophilus (strain HTA426) G...	424.0	[0..3]	[494..21]
gi\|89100706, gi\|... - gi\|89100706\|ref\|ZP_01173562.1\| YmcB [Bacillus sp. NRRL B-14911], gi\|89084581\|gb\|EAR63726.1\| YmcB [Ba...	420.0	[0..4]	[494..7]
gi\|47568277, gi\|... - gi\|47568277\|ref\|ZP_00238980.1\| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241], gi\|...	419.0	[0..7]	[494..11]
MIAB_BACCZ - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Bacillus cereus (strain ZK / E33L) GN=miaB... MIAB_BACHK - (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB OS=Bacillus thuringiensis subsp. konkukian ... MIAB_BACHK - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Bacillus thuringiensis subsp. konkukian (s... gi\|196030849, gi... - gi\|196038441\|ref\|ZP_03105750.1\| conserved hypothetical protein [Bacillus cereus NVH0597-99], gi\|1960...	419.0	[0..7]	[494..11]
MIAB_BACCN - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Bacillus cytotoxicus (strain DSM 22905 / C...	417.0	[0..7]	[493..11]
MIAB_BACC1 - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Bacillus cereus (strain ATCC 10987 / NRS 2...	417.0	[0..7]	[494..11]
MIAB_BACCR - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 3...	415.0	[0..7]	[493..11]
MIAB_BACWK - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Bacillus weihenstephanensis (strain KBAB4)...	415.0	[0..7]	[493..11]
gi\|254722040 - gi\|254722040\|ref\|ZP_05183829.1\| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str. A1... gi\|254735812 - gi\|254735812\|ref\|ZP_05193518.1\| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str. We... gi\|229267301, gi... - gi\|229602893\|ref\|YP_002868014.1\| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str. A... gi\|254683519 - gi\|254683519\|ref\|ZP_05147379.1\| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str. CN... gi\|254759376 - gi\|254759376\|ref\|ZP_05211401.1\| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str. Au... MIAB_BACAN - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Bacillus anthracis GN=miaB PE=3 SV=1 gi\|254739662 - gi\|254739662\|ref\|ZP_05197356.1\| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str. Kr... gi\|254751058 - gi\|254751058\|ref\|ZP_05203097.1\| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str. Vo... gi\|21401753 - ref\|NP_657738.1\| UPF0004, Uncharacterized protein family UPF0004 [Bacillus anthracis str. A2012] gi\|177652051, gi... - gi\|177652051\|ref\|ZP_02934597.1\| conserved hypothetical protein [Bacillus anthracis str. A0174], gi\|1... gi\|190560426, gi... - gi\|190568422\|ref\|ZP_03021329.1\| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I], ... gi\|170668152, gi... - gi\|170687836\|ref\|ZP_02879050.1\| conserved hypothetical protein [Bacillus anthracis str. A0465], gi\|1... gi\|170128307, gi... - gi\|170706889\|ref\|ZP_02897347.1\| conserved hypothetical protein [Bacillus anthracis str. A0389], gi\|1... gi\|167635860, gi... - gi\|167635860\|ref\|ZP_02394169.1\| conserved hypothetical protein [Bacillus anthracis str. A0442], gi\|1... gi\|49180549, gi\|... - gi\|49186622\|ref\|YP_029874.1\| hypothetical protein BAS3621 [Bacillus anthracis str. Sterne], gi\|49180... gi\|167512256, gi... - gi\|167639855\|ref\|ZP_02398124.1\| conserved hypothetical protein [Bacillus anthracis str. A0193], gi\|1... gi\|47504347, gi\|... - gi\|47529199\|ref\|YP_020548.1\| hypothetical protein GBAA3908 [Bacillus anthracis str. 'Ames Ancestor']... gi\|30258422, gi\|... - gi\|30263778\|ref\|NP_846155.1\| hypothetical protein BA3908 [Bacillus anthracis str. Ames], gi\|30258422... gi\|165872391, gi... - gi\|165872391\|ref\|ZP_02217026.1\| conserved hypothetical protein [Bacillus anthracis str. A0488], gi\|1... gi\|227813320, gi... - gi\|227813320\|ref\|YP_002813329.1\| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str. C...	415.0	[0..7]	[494..11]
MIAB_SHISS - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Shigella sonnei (strain Ss046) GN=miaB PE=... MIAB_SHIBS - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Shigella boydii serotype 4 (strain Sb227) ...	414.0	[0..62]	[511..1]

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Predicted Domain #1

Region A:
Residues: [1-60]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDIEDLLAG GVGGAPPGFR LPLNAVGINP KTNKSKRISS KPDQITASNR DSLAPPSMKI  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [61-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGTQTIYIKT FGCSHNQSDS EYMAGQLSAF GYALTEVPEE ADLWLINTCT VKSPSQSAMS  60
   61 TLITRGRSGK KPLVIAGCVP QGSRDLKELE GVSVVGVQQI DRVVEIVEET LKGHEVRLLT 120
  121 RKTLPALDLP KV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.978
Match:	2fug6
Description:	Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [193-500]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRNNFIEILP INVGCLGACT YCKTKHARGH LGSYTVDSLV ERVRTVISEG VKEIWLSSED  60
   61 TGAYGRDIGV NLPILLNAIV KELPSDQSTM LRIGMTNPPF ILEHLKEIAA VLRHPCVYTF 120
  121 LHVPVQSGSD SVLTAMNREY TASEFRTVVD TLTELVPGMQ IATDIICGFP GETDEDFSQT 180
  181 VELIKDYKFP QVHISQFYPR PGTPAAKMKK VQSKIVKQRS RELTSVFEAF APYTGMECRE 240
  241 ERIWITEVAT DGIHLVGHTK GYVQVLVTGP ESMLGTSAMA RITSVGRWSV FGEVIETFSS 300
  301 ANRETKSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.69897
Match:	2qgqA
Description:	No description for 2qgqA was found.

Predicted Domain #4

Region A:
Residues: [501-601]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EETKLPCSSN VSTCETCTCS AESCGEERSG EACNISGNIS GQDDNKGKSK KEEKEVQEVV  60
   61 VPGSSVANWG FIDKALVCGV FVSSVTILVL LISIACRVLL R

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits