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View Structure Prediction Details

Protein: LEA32_ARATH
Organism: Arabidopsis thaliana
Length: 256 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LEA32_ARATH.

Description E-value Query
Range
Subject
Range
gi|1526422 - gi|1526422|dbj|BAA11016.1| LEA protein in group 5 [Arabidopsis thaliana]
349.0 [0..1] [256..1]
gi|6648964 - gi|6648964|gb|AAF21310.1| seed maturation protein PM24 [Glycine max]
321.0 [0..1] [254..1]
gi|77997745 - gi|77997745|gb|ABB16353.1| seed maturation protein [Medicago truncatula]
316.0 [0..1] [254..1]
LEA34_GOSHI - Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum PE=4 SV=1
gi|226556 - gi|226556|prf||1601521F Lea D-34 gene
311.0 [0..1] [255..1]
gi|82045, gi|18337 - pir||S22500 embryonic protein ecp31 - carrot, gi|18337|emb|CAA43046.1| embryonic cell protein [Daucu...
285.0 [0..13] [253..15]

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Predicted Domain #1
Region A:
Residues: [1-111]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQEQPRRPR EPVKYGDVFE VSGELADKPI APEDAKMMQS AETHVFGHTQ KGGPAAVMQS  60
   61 AATTNIRGGF VHPDDKTELV AERGATVEQT VPAATVTTEF VGGQVVGQHV E

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 30.200659
Match: PF04927.3
Description: No description for PF04927.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [112-180]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRRVVAAART DEEALQSTIT IGEALEATVK TAGNKPVDQS DAAAIQAAEM RASGTNVIAL  60
   61 AGVAASAQS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 28.79588
Match: PF04927.3
Description: No description for PF04927.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [181-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AADHNATVDR DERKIKLRDV LTGAAGKLSA DRAVTREDAE GVVSAEMRNN PKLCTHPGGV  60
   61 AASLTVAARL NERVDI

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 22.49485
Match: PF04927.3
Description: No description for PF04927.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.812 N/A N/A a.64.1 Saposin


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle