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View Structure Prediction Details

Protein: CHLP_ARATH
Organism: Arabidopsis thaliana
Length: 467 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHLP_ARATH.

Description E-value Query
Range
Subject
Range
gi|2828267 - gi|2828267|emb|CAA74372.1| geranylgeranyl reductase [Arabidopsis thaliana]
276.0 [0..1] [467..6]

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Predicted Domain #1
Region A:
Residues: [1-467]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTVTLKSF TGLRQSSTEQ TNFVSHVPSS LSLPQRRTSL RVTAARATPK LSNRKLRVAV  60
   61 IGGGPAGGAA AETLAQGGIE TILIERKMDN CKPCGGAIPL CMVGEFNLPL DIIDRRVTKM 120
  121 KMISPSNIAV DIGRTLKEHE YIGMVRREVL DAYLRERAEK SGATVINGLF LKMDHPENWD 180
  181 SPYTLHYTEY DGKTGATGTK KTMEVDAVIG ADGANSRVAK SIDAGDYDYA IAFQERIRIP 240
  241 DEKMTYYEDL AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKGDIKKF QLATRNRAKD 300
  301 KILGGKIIRV EAHPIPEHPR PRRLSKRVAL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI 360
  361 VEGSQNGKKM IDEGDLRKYL EKWDKTYLPT YRVLDVLQKV FYRSNPAREA FVEMCNDEYV 420
  421 QKMTFDSYLY KRVAPGSPLE DIKLAVNTIG SLVRANALRR EIEKLSV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.0
Match: 2gmhA
Description: No description for 2gmhA was found.

Predicted functions:

Term Confidence Notes
catalytic activity 0.501220963069211 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle