YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUB7_ARATH
Organism:	Arabidopsis thaliana
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUB7_ARATH.

Description	E-value	Query Range	Subject Range
gi\|26450960 - gi\|26450960\|dbj\|BAC42587.1\| unknown protein [Arabidopsis thaliana]	153.0	[0..1]	[103..1]
gi\|46117250, gi\|... - gi\|46117250\|ref\|XP_384643.1\| hypothetical protein FG04467.1 [Gibberella zeae PH-1], gi\|42550408\|gb\|E...	149.0	[0..1]	[86..623]
gi\|38105871, gi\|... - gi\|39940600\|ref\|XP_359837.1\| hypothetical protein MG04940.4 [Magnaporthe grisea 70-15], gb\|EAA52248....	144.0	[0..1]	[86..295]
gi\|28918522, gi\|... - gi\|32414025\|ref\|XP_327492.1\| hypothetical protein [Neurospora crassa], gi\|28918522\|gb\|EAA28195.1\| hy... gi\|85085039 - gi\|85085039\|ref\|XP_957431.1\| hypothetical protein [Neurospora crassa OR74A]	140.0	[0..5]	[86..695]
gi\|113547322, gi... - gi\|115450501\|ref\|NP_001048851.1\| Os03g0129900 [Oryza sativa (japonica cultivar-group)], gi\|113547322...	138.0	[0..5]	[101..50]
gi\|38328313, gi\|... - gi\|41053587\|ref\|NP_957142.1\| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa [Danio reri...	135.0	[0..5]	[93..34]
gi\|38048555, gi\|... - gi\|38048555\|gb\|AAR10180.1\| similar to Drosophila melanogaster CG5548 [Drosophila yakuba], gi\|1954787...	135.0	[0..3]	[92..30]
gi\|220956996, gi... - gi\|220956996\|gb\|ACL91041.1\| CG5548-PA [synthetic construct], gi\|220947666\|gb\|ACL86376.1\| CG5548-PA [... CG5548-PA, FBpp0... - This gene is referred to in FlyBase by the symbol Dmel\CG5548 (CG5548, FBgn0030605). It is a protein...	133.0	[0..3]	[92..30]
gi\|118777825, gi... - gi\|118777825\|ref\|XP_308300.3\| AGAP007574-PA [Anopheles gambiae str. PEST], gi\|116132087\|gb\|EAA04597.... AGAP007574-PA - NADH dehydrogenase (ubiquinone) 1 beta subcomplex 7\|protein_coding\|2L:47791258:47792012:1\|gene:AGAP0...	132.0	[0..5]	[96..34]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVPGSSKKM IATQEEMSAA KIALGSRDMC AHLLIPLNKC RQAEFYLPWK CEDERHVYEK  60
   61 CEYELVMERM LAMKKIREEE ALAKQNKLQG NAAVPLIPKT ANA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	7.468521
Match:	PF05676.4
Description:	No description for PF05676.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.584	N/A	N/A	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.511	N/A	N/A	g.44.1	RING/U-box
View	Download	0.492	N/A	N/A	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.441	N/A	N/A	a.69.1	C-terminal domain of alpha and beta subunits of F1 ATP synthase
View	Download	0.413	N/A	N/A	a.76.1	Iron-dependent represor protein, dimerization domain
View	Download	0.344	N/A	N/A	a.69.1	C-terminal domain of alpha and beta subunits of F1 ATP synthase
View	Download	0.291	N/A	N/A	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like
View	Download	0.276	N/A	N/A	a.24.7	FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
View	Download	0.275	N/A	N/A	b.82.3	cAMP-binding domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits