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View Structure Prediction Details

Protein: CIPKO_ARATH
Organism: Arabidopsis thaliana
Length: 446 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CIPKO_ARATH.

Description E-value Query
Range
Subject
Range
gi|149930452, gi... - gi|66765941|emb|CAG30526.1| calcineurin B-like interacting protein kinase [Solanum lycopersicum], gi...
397.0 [0..1] [445..1]

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Predicted Domain #1
Region A:
Residues: [1-322]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKKMRRVGK YEVGRTIGEG TFAKVKFARN TDTGDNVAIK IMAKSTILKN RMVDQIKREI  60
   61 SIMKIVRHPN IVRLYEVLAS PSKIYIVLEF VTGGELFDRI VHKGRLEESE SRKYFQQLVD 120
  121 AVAHCHCKGV YHRDLKPENL LLDTNGNLKV SDFGLSALPQ EGVELLRTTC GTPNYVAPEV 180
  181 LSGQGYDGSA ADIWSCGVIL FVILAGYLPF SETDLPGLYR KINAAEFSCP PWFSAEVKFL 240
  241 IHRILDPNPK TRIQIQGIKK DPWFRLNYVP IRAREEEEVN LDDIRAVFDG IEGSYVAENV 300
  301 ERNDEGPLMM NAFEMITLSQ GL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.39794
Match: 1zmuA
Description: Catalytic and ubiqutin-associated domains of MARK2/PAR-1: Wild type
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [323-446]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLSALFDRRQ DFVKRQTRFV SRREPSEIIA NIEAVANSMG FKSHTRNFKT RLEGLSSIKA  60
   61 GQLAVVIEIY EVAPSLFMVD VRKAAGETLE YHKFYKKLCS KLENIIWRAT EGIPKSEILR 120
  121 TITF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.522879
Match: 2ehbD
Description: No description for 2ehbD was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle