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View Structure Prediction Details

Protein: gi|9293904, gi|2...
Organism: Arabidopsis thaliana
Length: 300 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9293904, gi|2....

Description E-value Query
Range
Subject
Range
gi|114589192 - gi|114589192|ref|XP_516736.2| PREDICTED: similar to KIAA1160 protein [Pan troglodytes]
420.0 [0..1] [297..101]

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Predicted Domain #1
Region A:
Residues: [1-105]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE  60
   61 IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY SKHSA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.39794
Match: 1x4tA
Description: Solution structure of Isy1 domain in hypothetical protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [106-300]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KMTDLEGNII DVPNPSGRGP GYRYFGAAKK LPGVRELFEK PPELRKRKTR YDIYKRIDAS  60
   61 YYGYRDDEDG ILEKLERKSE GGMRKRSVEE WRRLDEVRKE ARKGASEVVS VGAAAAAARE 120
  121 VLFEEEEDVV EEERMEREKE EEKEREFVVH VPLPDEKEIE KMVLEKKKMD LLSKYASEDL 180
  181 VEQQTEAKSM LNIHR

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 68.853872
Match: PF06246.3
Description: No description for PF06246.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle