YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9797753, gi\|2...
Organism:	Arabidopsis thaliana
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9797753, gi|2....

Description	E-value	Query Range	Subject Range
gi\|109469357, gi... - gi\|109471518\|ref\|XP_001059141.1\| PREDICTED: similar to MRG-binding protein [Rattus norvegicus], gi\|1...	153.0	[0..26]	[133..85]
gi\|26342779 - gi\|26342779\|dbj\|BAC35046.1\| unnamed protein product [Mus musculus]	153.0	[0..26]	[133..11]
gi\|220957080, gi... - gi\|220957080\|gb\|ACL91083.1\| MrgBP-PA [synthetic construct], gi\|220947698\|gb\|ACL86392.1\| MrgBP-PA [sy... MrgBP-PA - The gene MrgBP is referred to in FlyBase by the symbol Dmel\MrgBP (CG13746, FBgn0033341). It is a pr...	144.0	[0..18]	[132..4]
gi\|37681741 - gi\|37681741\|gb\|AAQ97748.1\| chromosome 20 open reading frame 20 [Danio rerio]	144.0	[0..21]	[133..2]
gi\|15028365 - gi\|15028365\|gb\|AAK76659.1\| unknown protein [Arabidopsis thaliana]	141.0	[0..1]	[133..1]
gi\|208966030 - gi\|208966030\|dbj\|BAG73029.1\| chromosome 20 open reading frame 20 [synthetic construct] C20orf20 - chromosome 20 open reading frame 20	139.0	[0..34]	[133..19]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGRTDESGG GGKEKEEEQD GLSVHSPCKA LPSSASSLSK EQSQVELELR LLEALEIYPP  60
   61 VKLRGIHRHF VLYGLMEYLG RSFDRPFTAD EVLQLLDRFY NIEMLKSDDE DIDILNHEED 120
  121 FTLPQSFFDK EEE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	40.30103
Match:	PF07904.4
Description:	No description for PF07904.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits