YRC Public Data Repository - Protein Structure Prediction

Protein:	CLPR1_ARATH
Organism:	Arabidopsis thaliana
Length:	387 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLPR1_ARATH.

Description	E-value	Query Range	Subject Range
CLPP_YERE8 - ATP-dependent Clp protease proteolytic subunit OS=Yersinia enterocolitica serotype O:8 / biotype 1B ... CLPP_YEREN - ATP-dependent Clp protease proteolytic subunit OS=Yersinia enterocolitica GN=clpP PE=3 SV=1	295.0	[0..134]	[356..2]
gi\|77974303 - gi\|77974303\|ref\|ZP_00829844.1\| COG0740: Protease subunit of ATP-dependent Clp proteases [Yersinia fr... gi\|238710696, gi... - gi\|238751006\|ref\|ZP_04612502.1\| ATP-dependent Clp protease proteolytic subunit [Yersinia rohdei ATCC...	295.0	[0..134]	[356..2]
gi\|50932981, gi\|... - gi\|50932981\|ref\|XP_476018.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|48475230\|g...	295.0	[0..62]	[385..53]
gi\|62179060, gi\|... - gi\|62179060\|ref\|YP_215477.1\| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica sub...	294.0	[0..105]	[356..18]
gi\|90579278, gi\|... - gi\|90579278\|ref\|ZP_01235088.1\| ATP-dependent Clp protease proteolytic subunit [Vibrio angustum S14],... gi\|89073230, gi\|... - gi\|89073230\|ref\|ZP_01159760.1\| ATP-dependent Clp protease proteolytic subunit [Photobacterium sp. SK...	293.0	[0..139]	[356..7]
CLPP_THIDA - ATP-dependent Clp protease proteolytic subunit OS=Thiobacillus denitrificans (strain ATCC 25259) GN=...	293.0	[0..140]	[358..9]
CLPP_VIBTL - ATP-dependent Clp protease proteolytic subunit OS=Vibrio tasmaniensis (strain LGP32) GN=clpP PE=3 SV... gi\|84387735, gi\|... - gi\|84387735\|ref\|ZP_00990751.1\| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus 12B...	293.0	[0..139]	[355..7]
CLPP_ERWCT - ATP-dependent Clp protease proteolytic subunit OS=Erwinia carotovora subsp. atroseptica GN=clpP PE=3... CLPP_PECAS - ATP-dependent Clp protease proteolytic subunit OS=Pectobacterium atrosepticum (strain SCRI 1043 / AT...	293.0	[0..134]	[355..2]
gi\|46914236, gi\|... - gi\|54309798\|ref\|YP_130818.1\| ATP-dependent Clp protease proteolytic subunit [Photobacterium profundu... gi\|27363512 - ref\|NP_759040.1\| ATP-dependent Clp protease, proteolytic subunit [Photobacterium profundum SS9]	292.0	[0..139]	[356..7]
gi\|90410782, gi\|... - gi\|90410782\|ref\|ZP_01218797.1\| ATP-dependent Clp protease proteolytic subunit [Photobacterium profun...	292.0	[0..139]	[356..7]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATALVSPLT SQLNHEAVCS KFVLPKSPFM SGSKLFSSNM PCSTVPRRTR RSHCFASAKD  60
   61 MSFDHIPKQF RGDNLKDGVM QNFKNVPQYF Y

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [92-387]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLNSAQMDMF MTEDSPVRRQ AEKVTEESIS SRNNYLNNGG IWSMSGMNAA DARRYSMSVQ  60
   61 MYRGGGGGGG SERPRTAPPD LPSLLLDARI CYLGMPIVPA VTELLVAQFM WLDYDNPTKP 120
  121 IYLYINSPGT QNEKMETVGS ETEAYAIADT ISYCKSDVYT INCGMAFGQA AMLLSLGKKG 180
  181 YRAVQPHSST KLYLPKVNRS SGAAIDMWIK AKELDANTEY YIELLAKGTG KSKEQINEDI 240
  241 KRPKYLQAQA AIDYGIADKI ADSQDSSFEK RDYDGTLAQR AMRPGGGSPA APAGLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.045757
Match:	1tg6A
Description:	Crystallography and mutagenesis point to an essential role for the N-terminus of human mitochondrial ClpP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits