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View Structure Prediction Details

Protein: gi|16974605, gi|...
Organism: Arabidopsis thaliana
Length: 748 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16974605, gi|....

Description E-value Query
Range
Subject
Range
gi|240255969, gi... - gi|240255969|ref|NP_567526.4| unknown protein [Arabidopsis thaliana], gi|23506021|gb|AAN28870.1| At4...
1365.0 [0..4] [726..1]
gi|89257646 - gi|89257646|gb|ABD65133.1| hypothetical protein 40.t00008 [Brassica oleracea]
1304.0 [0..4] [728..1]
gi|92872100 - gi|92872100|gb|ABE80901.1| At5g47580/MNJ7_17 [Medicago truncatula]
1231.0 [0..6] [729..2]

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Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGILGCDAHG DLNDAEFSKP LPSIGIYVAV ASLICGLAMA ADLIHGFRHR KFWFPCKFFS  60
   61 LNATSLTFIA VGIKLSVDLN TSMPSRQDQL AKLSSTVFVC TVMGNS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [107-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSLGIMDNN DLLMNLMALG ILVITDVVNI CIQLGTGAIY VFSEEHFLVV LLMLLMLMIL  60
   61 CFSATTVPTT KRILESKYNK RYDVAMKCPL ATERTVAKKI QQDLSKFWMM AHTSSPQFVM 120
  121 ARSVTCTASG FFCLLSAITL GEAMVRSY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [255-393]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FLRPRSLGFC HGDSDYKWST SLVLVCQTTT VAIGTIAPAI RWFTAVNFRC PIRGKKYYRD  60
   61 EFRIESYWTH WFSEKKQHPL SLWILKERRY RKTAHNAKRW ILDVCIVIQY VIVFGSKIIR 120
  121 YISVSCVGKI LLCCHFALR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [394-634]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSNTITHSES EKSDSNPSSR QDLASFVLHL EGEDPLVDVM VRSNREATDH WIEKGRKKQP  60
   61 VNLIELLEAT TPISKGFEGI AEFDSNKVAS LAHGEPPNCW ALPLVTLTSI AVALPDIKPS 120
  121 SLKKLLNAVN EALEYVNKFE CVLDTGGESV NLRKAAEVVW LGVDLYHKWF DVDLRKLSKQ 180
  181 QRNPEETLRE LMEIAKKEFS ESWQMNLMVC MKHKPSHWPI KTLAANSMYR ICQTILLTYE 240
  241 S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [635-748]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDYGTGEALL RKLESTISDI VSGCFCNVAQ VISVKCLVSA VEVREESVRG AALHLGRTEK  60
   61 ILEILERRRL PKLRCDQMKN IDEWRAFYKI NSCECDNNNK TVYPDSDELR LTVE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.873 N/A N/A a.24.17 Group V grass pollen allergen


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle