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View Structure Prediction Details

Protein: gi|25518081, gi|...
Organism: Arabidopsis thaliana
Length: 278 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25518081, gi|....

Description E-value Query
Range
Subject
Range
gi|146642 - gi|146642|gb|AAA24078.1| protease La (lon)
253.0 [0..62] [277..1]

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Predicted Domain #1
Region A:
Residues: [1-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPSTVSSP SFKSTPPYLS AFNPKPLHLP ATYRSINRRS CKLLSFRCSS SSFSEKHHNN  60
   61 ANPPKSDDLV ELPLFPLPLV LFPGATIPLQ IFEFRYRVMM QTLLQSDLRF GVVYSDAVSG 120
  121 SAAGIGCVGE IVKHERLVDD RFFLICKGQE RFRVTDLVRT KPYLVAKVTW LEDRPSGEEN 180
  181 LDELANEVEV LMKEVIRLSN RLNGKPDKES QDLRKNQFPT PFSFFVGSTF EGAPMEQQAL 240
  241 LELEDTAARL KRERETLRNT LNYLTAASAV KDVFPSQP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.69897
Match: 1zboA
Description: Crystal Structure of the Hypothetical Protein BPP1347 from Bordetella parapertussis, Northeast Structural Genomics Target BoR27.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle