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View Structure Prediction Details

Protein: FB76_ARATH
Organism: Arabidopsis thaliana
Length: 379 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FB76_ARATH.

Description E-value Query
Range
Subject
Range
gi|69255787, gi|... - gi|69255787|ref|ZP_00605529.1| Sel1-like repeat [Magnetococcus sp. MC-1], gi|68248152|gb|EAN30235.1|...
260.0 [0..19] [368..351]

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Predicted Domain #1
Region A:
Residues: [1-306]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG  60
   61 STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK AHNWSEYSHR FLKRCVDAGS 120
  121 LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG 180
  181 VALCARAAFL GHVDALRELG HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS 240
  241 TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR 300
  301 LCSHAG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.0
Match: 1ouvA
Description: Helicobacter cysteine rich protein C (HcpC)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [307-379]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CGRPETRKHE FRRCSVCGVV NYCSRACQAL DWKLRHKMDC APVQRWLEEG DGGEGNVQID  60
   61 GNGNGDNVLL PMS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.1
Match: 2d8qA
Description: No description for 2d8qA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle