| Protein: | U2A2A_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 573 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for U2A2A_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
304.0 | [0..146] | [571..6] |
|
|
301.0 | [0..146] | [571..6] |
|
|
299.0 | [0..146] | [571..6] |
|
|
299.0 | [0..146] | [571..6] |
|
Region A: Residues: [1-160] |
1 11 21 31 41 51
| | | | | |
1 MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR 60
61 DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS SRHRDHSRER GERRERGGRD 120
121 DDDYRRSRDR DHDRRRDDRG GRRSRRSRSR SKDRSERRTR
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [161-230] |
1 11 21 31 41 51
| | | | | |
1 SRSPSKSKQR VSGFDMAPPA SAMLAAGAAV TGQVPPAPPT LPGAGMFPNM FPLPTGQSFG 60
61 GLSMMPIQAM
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.523 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.383 | a.275.1 | Description not found. |
| View | Download | 0.362 | a.4.1 | Homeodomain-like |
| View | Download | 0.353 | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.302 | a.4.1 | Homeodomain-like |
| View | Download | 0.300 | a.4.1 | Homeodomain-like |
| View | Download | 0.267 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.266 | a.112.1 | Description not found. |
| View | Download | 0.201 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [231-323] |
1 11 21 31 41 51
| | | | | |
1 TQQATRHARR VYVGGLSPTA NEQSVATFFS QVMAAVGGNT AGPGDAVVNV YINHEKKFAF 60
61 VEMRSVEEAS NAMSLDGIIF EGAPVKVRRP SDY
|
| Detection Method: | |
| Confidence: | 34.522879 |
| Match: | 2g4bA |
| Description: | No description for 2g4bA was found. |
|
Region A: Residues: [324-438] |
1 11 21 31 41 51
| | | | | |
1 NPSLAATLGP SQPSPHLNLA AVGLTPGASG GLEGPDRIFV GGLPYYFTES QVRELLESFG 60
61 GLKGFDLVKD RETGNSKGYA FCVYQDLSVT DIACAALNGI KMGDKTLTVR RANQG
|
| Detection Method: | |
| Confidence: | 19.39794 |
| Match: | 2u2fA |
| Description: | Splicing factor U2AF 65 KDa subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [439-573] |
1 11 21 31 41 51
| | | | | |
1 TMLQKPEQEN VLLHAQQQIA FQRVMLQPGA VATTVVCLTQ VVTEDELRDD EEYGDIMEDM 60
61 RQEGGKFGAL TNVVIPRPSP NGEPVAGLGK VFLKYADTDG STRARFGMNG RKFGGNEVVA 120
121 VYYPEDKFEQ GDYGA
|
| Detection Method: | |
| Confidence: | 17.522879 |
| Match: | 2d9pA |
| Description: | No description for 2d9pA was found. |
